diff --git a/qim3d/__init__.py b/qim3d/__init__.py index 119a2f42c20d0f3a9ffe3ff1e6466bb5d7e323e9..9b02481bddbb70bf131324494550d5bfcd0339b9 100644 --- a/qim3d/__init__.py +++ b/qim3d/__init__.py @@ -1,4 +1,14 @@ +<<<<<<< HEAD """qim3d: A Python package for 3D image processing and visualization. +======= +import qim3d.io as io +import qim3d.gui as gui +import qim3d.viz as viz +import qim3d.utils as utils +import qim3d.models as models +import qim3d.process as process +import logging +>>>>>>> 1622d378193877cb85f53b1a05207088b3f3cf0a The qim3d library is designed to make it easier to work with 3D imaging data in Python. It offers a range of features, including data loading and manipulation, diff --git a/qim3d/examples/slice_218x193.png b/qim3d/examples/slice_218x193.png new file mode 100644 index 0000000000000000000000000000000000000000..f26c876dc030007e0d1129b42db3fa46470f3caa Binary files /dev/null and b/qim3d/examples/slice_218x193.png differ diff --git a/qim3d/utils/cli.py b/qim3d/utils/cli.py new file mode 100644 index 0000000000000000000000000000000000000000..f07135782e2cb65ea0350c53d9108c7b160dca29 --- /dev/null +++ b/qim3d/utils/cli.py @@ -0,0 +1,39 @@ +import argparse +from qim3d.gui import data_explorer, iso3d, annotation_tool, local_thickness, layers2d + +def main(): + parser = argparse.ArgumentParser(description='Qim3d command-line interface.') + subparsers = parser.add_subparsers(title='Subcommands', dest='subcommand') + + # subcommands + gui_parser = subparsers.add_parser('gui', help = 'Graphical User Interfaces.') + + gui_parser.add_argument('--data-explorer', action='store_true', help='Run data explorer.') + gui_parser.add_argument('--iso3d', action='store_true', help='Run iso3d.') + gui_parser.add_argument('--annotation-tool', action='store_true', help='Run annotation tool.') + gui_parser.add_argument('--local-thickness', action='store_true', help='Run local thickness tool.') + gui_parser.add_argument('--layers2d', action='store_true', help='Run layers2d.') + gui_parser.add_argument('--host', default='0.0.0.0', help='Desired host.') + + args = parser.parse_args() + + if args.subcommand == 'gui': + arghost = args.host + if args.data_explorer: + + data_explorer.run_interface(arghost) + + elif args.iso3d: + iso3d.run_interface(arghost) + + elif args.annotation_tool: + annotation_tool.run_interface(arghost) + + elif args.local_thickness: + local_thickness.run_interface(arghost) + + elif args.layers2d: + layers2d.run_interface(arghost) + +if __name__ == '__main__': + main() \ No newline at end of file diff --git a/qim3d/viz/__init__.py b/qim3d/viz/__init__.py index dad09ad105f1de07f16d81cdf8bf558773cee2e9..8f341f0c9c74e747207c880bb0a57e1f91b8518c 100644 --- a/qim3d/viz/__init__.py +++ b/qim3d/viz/__init__.py @@ -12,4 +12,4 @@ from .local_thickness_ import local_thickness from .structure_tensor import vectors from .metrics import plot_metrics, grid_overview, grid_pred, vol_masked from .preview import image_preview -from . import layers2d \ No newline at end of file +from . import layers2d diff --git a/qim3d/viz/layers2d.py b/qim3d/viz/layers2d.py index 6bd5c9157d88082e260011a2842abae064b1a9b7..478583145ce5f6372f6ec1f6b1238ccbb80dea97 100644 --- a/qim3d/viz/layers2d.py +++ b/qim3d/viz/layers2d.py @@ -1,7 +1,11 @@ """ Provides a collection of visualisation functions for the Layers2d class.""" import matplotlib.pyplot as plt import numpy as np +<<<<<<< HEAD from qim3d.processing import layers2d as l2d +======= +from qim3d.process import layers2d as l2d +>>>>>>> 1622d378193877cb85f53b1a05207088b3f3cf0a def create_subplot_of_2d_arrays(data, m_rows = 1, n_cols = 1, figsize = None): '''