├── config                      <- Configuration files (e.g., data_config.json).
│
├── data 
│   ├── external                <- Data from third-party sources. 
│   ├── interim                 <- Intermediate data that has been transformed. 
│   ├── processed               <- Final, canonical data sets for modeling. 
│   │   ├── Bornholm
│   │   │   ├── Labelled Data   <- Labelled Bornholm data.
│   │   │   └── Unlabelled Data <- Unlabelled Bornholm data.
│   │   └── Svalbard_Full       <- Processed Svalbard data.
│   └── raw 
│       └── Svalbard_Full       <- Original, immutable Svalbard data dump.
│   
├── environment.yml             <- Conda environment configuration file.
│  
├── LICENSE                     <- Open-source license if one is chosen 
│      
├── Makefile                    <- Makefile with convenience commands like make train 
│      
├── models                      <- Trained and serialized models, model predictions, or model summaries. 
│   ├── best_model_Bornholm     <- Best model for Bornholm.
│   └── best_model_Svalbard      <- Best model for Svalbard.
│
├── pyproject.toml              <- Project configuration file for SEAuAIS (dependencies, tools like black, etc.)      
│           
├── README.md                   <- The top-level README for developers using this project. 
│ 
├── reports                     <- Generated reports such as HTML, PDF, LaTeX, etc. 
│   ├── Bornholm                <- Reports for Bornholm.
│   ├── Grouped                 <- Grouped reports.
│   └── Svalbard                <- Reports for Svalbard.
│    
├── requirements.txt            <- File for specifying the environment and Python dependencies. 
│     
├── scripts                     <- Standalone command-line scripts to perform various tasks like training or evaluation.          
│   ├── data                    <- Scripts for data-related tasks.
│   │   ├── data_download.py    <- Script for downloading data.
│   │   └── data_preprocessing.py <- Script for preprocessing data.
│   ├── model                   <- Scripts for model-related tasks.
│   │   ├── train.py            <- Script for training models.
│   │   └── train_Bornholm.py   <- Script for training models.
│   └── results                 <- Scripts for handling results.
│       ├── ship_inference_grouped.ipynb <- Jupyter notebook for ship inference (both ROIs).
│       └── video.py            <- Script for generating videos.
│      
├── setup.cfg                   <- Configuration file for linting (e.g., flake8 settings). 
│      
├── setup.py                    <- Setup file for building and distributing the project. 
│     
├── src                         <- Main source code for the SEAuAIS Python package. 
│   ├── data_utils              <- Utilities for data processing.
│   │   ├── __init__.py         <- Makes data_utils a Python package.
│   │   └── helper.py           <- Functions for data processing.
│   ├── SEAuAIS                 <- Source code for the SEAuAIS package. 
│   │   ├── __init__.py         <- Makes SEAuAIS a Python package. 
│   │   ├── DB_score.py         <- DB score logic function.
│   │   ├── helper_functions.py <- Utility/helper functions.
│   │   ├── preproc.py          <- Loads and handles data for model.
│   │   ├── SEAuAIS.py          <- The model.
│   │   └── SEAuAIS_train_and_test.py <- Training and test logic.
│   ├── inference_utils         <- Utilities for inference and plotting.
│   │   ├── __init__.py         <- Makes inference_utils a Python package.
│   │   └── plot_helper.py      <- Helper functions for plotting.
│   └── model_utils             <- Utilities for model handling.
│       ├── __init__.py         <- Makes model_utils a Python package.
│       ├── config.py           <- Configuration settings like hyperparameters and file paths.
│       ├── helper.py           <- Helper functions for model handling.
│       └── train.py            <- Core training logic (called by scripts/train_model.py).
│
├── test_environment.py         <- Script to test if the environment is set up correctly.