Commits · 3D_UNet · QIM / Tools / qim3d

Browse files

Feb 25, 2025
- added data preparation pipeline to docs · 66801424
  s193396 authored 5 months ago
  
  66801424
- Merge branch 'branch' into branch '3D_UNet' · a065371b
  s193396 authored 5 months ago
  
  a065371b
Feb 24, 2025
- Merge branch 'threshold_for_v1' into 'main' · e2918f51
  fima authored 5 months ago
  e2918f51
- Threshold for v1 · 5e7d8903
  fima authored 5 months ago
  
  5e7d8903
- Merge branch 'mesh-pygel3d' into 'main' · 9b822c1e
  fima authored 5 months ago
  9b822c1e
- Mesh pygel3d · 16c5a7cb
  s212246 authored 5 months ago and fima committed 5 months ago
  
  16c5a7cb
- Merge branch 'tifffile-imagecodecs' into 'main' · 3553c935
  fima authored 5 months ago
  3553c935
- Tifffile imagecodecs · 0659c34a
  s212246 authored 5 months ago and fima committed 5 months ago
  
  0659c34a
- Merge branch 'line-profile' into 'main' · 514fee2a
  fima authored 5 months ago
  514fee2a
- Line profile · b9131fdc
  s214743 authored 5 months ago and fima committed 5 months ago
  
  b9131fdc
- Merge branch 'pre_commits' into 'main' · 14bed6a3
  fima authored 5 months ago
  14bed6a3
- Pre commits · 52b613b5
  s193396 authored 5 months ago and fima committed 5 months ago
  
  52b613b5
Feb 17, 2025
- added augmentation pipeline to docs · 19f96d43
  s193396 authored 5 months ago
  
  19f96d43
- fixed docstring for augmentations · 9d72262c
  s193396 authored 5 months ago
  
  9d72262c
- removed 2D inference · 505419af
  s193396 authored 5 months ago
  
  505419af
- removed 2D augmentations · f79041f8
  s193396 authored 5 months ago
  
  f79041f8
- removed 2D dataloader · ddc40406
  s193396 authored 5 months ago
  
  ddc40406
- removed UNet2D · 6f8cb981
  s193396 authored 5 months ago
  
  6f8cb981
- temporary · 3d734ce5
  s193396 authored 5 months ago
  
  3d734ce5
Feb 11, 2025
- dimensions as tuple instead of unpacked · ac6a7a44
  s193396 authored 6 months ago
  
  ac6a7a44
- expand image dimensions in dataloader · d0b1d98a
  s193396 authored 6 months ago
  
  d0b1d98a
- num_workers = 0 for cpu · f068dd86
  s193396 authored 6 months ago
  
  f068dd86
- removed unsqueeze since extra dimension is added in dataloader · b4ea1bf3
  s193396 authored 6 months ago
  
  b4ea1bf3
- fixing augmentation errors · ed05746d
  s193396 authored 6 months ago
  
  ed05746d
- testing things in notebook · 24923e92
  s193396 authored 6 months ago
  
  24923e92
- refactored augmentations to use monai instead · ab581084
  s193396 authored 6 months ago
  
  ab581084
- added support for 3D in data preparation functions · 070fc09a
  s193396 authored 6 months ago
  
  070fc09a
- Merge branch 'main' of lab.compute.dtu.dk:QIM/tools/qim3d into 3D_UNet · 93942fe3
  s193396 authored 6 months ago
  
  93942fe3
Feb 10, 2025
- Merge remote-tracking branch 'refs/remotes/origin/main' · 3e1468bd
  fima authored 6 months ago
  
  3e1468bd
- Hotfix: Torch dependency · 9278a1ef
  fima authored 6 months ago
  
  9278a1ef
Feb 04, 2025
- draft for 3D UNet notebook · e21f1d51
  s193396 authored 6 months ago
  
  e21f1d51
- 3D UNet implementatioN · ae49d74c
  s193396 authored 6 months ago
  
  ae49d74c
- more fixes to docs · 7f406282
  s193396 authored 6 months ago
  
  7f406282
- small documentation fix · 6866dfcc
  s193396 authored 6 months ago
  
  6866dfcc
- updated segmentation pipeline notebook · 3c284b4a
  s193396 authored 6 months ago
  
  3c284b4a
- updated notebook · 968d7efe
  s193396 authored 6 months ago
  
  968d7efe
- renaming existing unet to UNet2D · b2a8a35c
  s193396 authored 6 months ago
  
  b2a8a35c
- Merge branch 'notebook_unit_testing' into 'main' · 15a48272
  fima authored 6 months ago
  15a48272
- Notebook unit testing · 841bd675
  s193396 authored 6 months ago and fima committed 6 months ago
  
  841bd675
Feb 03, 2025
- Merge branch 'downloader_print' into 'main' · 29bcad95
  fima authored 6 months ago
  29bcad95