Implemented 3D connected components as wrapper class for scipy.ndimage.label

Ticket: https://www.notion.so/qim-dtu/3D-connected-components-ca5c410fef49444eac7c6efd0b56ead4?pvs=4

I have made a simple plot functions that takes the ConnectedComponents object and extracts the connected_components volume.

However I don't know if it is necessary as the user could do this manually.

def plot_connected_components(connected_components: ConnectedComponents, **kwargs):
    """ Plots connected components from the ConnectedComponents class as 2d slices.

    Args:
        connected_components (ConnectedComponents): The connected components class from the qim3d.utils.connected_components module.
        **kwargs: Additional keyword arguments to pass to qim3d.viz.img.slice_viz.

    Returns:
        matplotlib.pyplot: the 3D plot of the connected components.
    """
    fig = slice_viz(connected_components.connected_components, **kwargs)
    return fig

requested review from @fima

assigned to @s204159

Very nice class! I added a few comments to consider before merging

added 1 commit

• 6296e8d3 - Refactored connectedComponents to CC

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• 680120c3 - refactored and added logs
• 6238a8d3 - added get_cc to init
• 604a5e5e - Updated viz function

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• 3e6e850a - Finished plot function

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resolved all threads

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• 76a97c56 - updated indexing to include random

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• 5277a48a - Updated plot cc

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added 29 commits

• 5277a48a...75cb18fe - 27 commits from branch main
• d0439a81 - merged with main and solved conflicts
• 7d7c2ba6 - removing cache files

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added 1 commit

• 95fb088d - fixing imports

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added 1 commit

• 1f064288 - small changes, including string for viz

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approved this merge request

mentioned in commit e14ba9f7

merged