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Update 3d_microstructure.md

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......@@ -21,10 +21,10 @@ Quantitative characterization of 3D images involves measuring the geometric and
### Segmentation based on machine learning
If advantageous, we use machine learning and deep learning for segmentation, for example, when [analyzing cardiac tissue](https://elifesciences.org/articles/71359). To minimize the need for human input, we do research in active learning.
If advantageous, we use machine learning and deep learning for segmentation, for example, when analyzing cardiac tissue as in [Reichardt et al., 2021](https://elifesciences.org/articles/71359). To minimize the need for human input, we research in active learning.
### Dictionary-based segmentation
Our [dictionary-based segmentation](https://ieeexplore.ieee.org/document/9150995) is based on machine learning principles. Both the the dictionary and the associated labels are learned from data. This enables automatic image segmentation, fast enough for real-time interaction. An outcome of this is the [InSegt](https://github.com/vedranaa/InSegt) segmentation tool. InSegt has been used for numerous projects, and in particular for analysing [microstructure of composite materials](https://www.sciencedirect.com/science/article/pii/S0266353821002852?via%3Dihub) but also [compound bee eye](https://bmczool.biomedcentral.com/articles/10.1186/s40850-021-00101-w).
Our dictionary-based segmentation [Dahl et al., 2020](https://ieeexplore.ieee.org/document/9150995) is based on machine learning principles. Both the the dictionary and the associated labels are learned from data. This enables automatic image segmentation, fast enough for real-time interaction. An outcome of this is the Insegt segmentation tool [[project page]](https://github.com/vedranaa/InSegt). InSegt has been used for numerous projects, and in particular for analysing microstructure of composite materials [Wang et al. 2021](https://www.sciencedirect.com/science/article/pii/S0266353821002852?via%3Dihub) but also compound bee eye [Tichit et al. 2022](https://bmczool.biomedcentral.com/articles/10.1186/s40850-021-00101-w).
<div align="center">
<img title="Interactive segmentation of an X-ray CT slice of a bee eye." src="images/segmentation.gif" alt="Interactive segmentation segmentation of a X-ray CT slice of a bee eye" width="600"/>
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