Functions updated, evaluation updated

csv_files/bookstore_csv/mapping_ast.csv

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+2e7168a0de7650eb3dfb57b1dcf0bb1c637c4aa6,f2fcbdc36def7d8851d733d570f00e2e94b68155
+668f6fb87f546fdb6d61b19913868ae6cb37c588,97ccb69cc4c2f730a5050b8d4d0f2c058089f51d
+ad8f2fa5c14b9c2eda1bab19fc0eb7f33a9ece44,7826b9725d893b2423fecd7c5840911f07707893
+c3a17ad68b4b55e5feb6f194de6754535b1bac69,7e5833a5983388975b1fb26ec611a09807ba3c38
+59e4f86a4d265dd166aaabb5fd3277b07668881f,29db0fdb898d8e9a67ba6d9d606f2e8e7bcf26b0
+04bfbd44fc64324dceab22b069c90bb723ea9c49,e9d12bae3cc9fd9c856575e3f15a180b4ab37dc7
+7f69dcee1135798e8b06e2fbf8539f7f04adb6d6,673aaee97c59baaccc653a37e6989bd01297e78c
+011fad3dc5cd82ee511b196130f5ea7b54cc6ea0,c8876b959f65f3eedcc4b35700398d8aaece0452
+d604f45e28e56be479a20c2e0a52fbe3a757e2c5,7fa53863f8275b8bdba21a792d1167d2a8b28b7a

formast/commitdif.py

 import csv
 import git
 import click
-#import getfile as gf
 from tqdm import tqdm
 
 @click.command()
@@ -22,6 +21,7 @@ def main(repo, output, ignore_all_space):
             if len(parrent := commit.parents) != 1:
                 continue
             
+            # Option to ignore-all-space
             diff = repo.git.diff(parrent, commit, numstat=True, ignore_all_space=ignore_all_space)
             for line in diff.splitlines():
                 num_additions, num_deletions, filename = line.split("\t")

src/formast/__main__.py

@@ -2,6 +2,9 @@ import click
 import os
 from tree_sitter import Language, Parser
 
+import base64
+import hashlib
+
 import logging
 
 from pathlib import Path
@@ -21,11 +24,15 @@ language_file = Path(__file__).absolute().parent.parent.parent / 'build' / 'my-l
 JAVA_LANGUAGE = Language(str(language_file), 'java')
 
 @click.command()
-@click.option("--overwrite", is_flag=True, help="Overwrite the original .java file with the .ast content")
+@click.option("--writetoken", is_flag=True, help="Write the new file with the tokenized content")
+@click.option("--writeast", is_flag=True, help="Write the new file with the AST content")
+@click.option("--writerelativeast", is_flag=True, help="Write the AST content with relative positions")
+@click.option("--writecompast", is_flag=True, help="Write the new file with the compressed AST content and hashing")
+@click.option("--overwrite", is_flag=True, help="Overwrite the original .java file with the new content")
 @click.option("-v", "--verbose", count=True, help="Increase output verbosity")
 @click.argument("file_path", type=click.Path(exists=True))
 ## Formast 
-def formast(file_path, overwrite, verbose):
+def formast(file_path, writetoken, writeast, writerelativeast, writecompast, overwrite, verbose):
 
     # initialize logging
     logging.basicConfig(level=verbose)
@@ -41,8 +48,37 @@ def formast(file_path, overwrite, verbose):
     log.info("Sucessfully created parser.")
 
     log.info(f"Processing {file_path}...")
+    
+    ## Handling options 
+    # Token based
+    if writetoken:  
         tree = parse_java_file(parser, file_path)
-    save_ast_file(file_path, tree)
+        save_tokenized_file(file_path, tree)
+    # AST based
+    elif writeast:
+        with open(file_path, "rb") as f:
+            code = f.read()
+        tree = parser.parse(code)
+        ast_code = process_tree(tree, code)
+        with open(file_path+".ast", 'w') as f:
+            f.write(ast_code)
+    # Compressed AST based
+    elif writecompast:
+        with open(file_path, "rb") as f:
+            code = f.read()
+        tree = parser.parse(code)
+        ast_code = process_tree_comp(tree)
+        with open(file_path+".ast", 'w') as f:
+            f.write(ast_code)
+    # Relative AST based
+    elif writerelativeast:
+        with open(file_path, "rb") as f:
+            code = f.read()
+        tree = parser.parse(code)
+        ast_code = process_tree_relatively(tree, code)
+        with open(file_path+".ast", 'w') as f:
+            f.write(ast_code)
+
 
     # If overwrite is true, overwrite the original .java file with the .ast content
     if overwrite:
@@ -51,11 +87,12 @@ def formast(file_path, overwrite, verbose):
         with open(file_path, 'w') as java_file:
             java_file.write(ast_content)
         os.remove(file_path+".ast")
-        log.info("Original .java file overwritten with .ast content!")
+        #log.info("Original .java file overwritten with .ast content!")
     else:
         log.info("AST file saved!")
 
 
+
 ## Tree traversal function
 def traverse(tree):
     cursor = tree.walk()
@@ -74,6 +111,102 @@ def traverse(tree):
         else:
             break
 
+## Processes a tree, compressed AST with hashing
+def process_tree_comp(tree):
+    lookup = {}
+    lines = []
+
+    def process_node(node):
+        line = ""
+
+        if node.children:
+            children = []
+            for child in node.children:
+                child_result = process_node(child)
+                if child_result is not None:
+                    children.append(child_result)
+            line = 'B {} {}'.format(node.type, ' '.join(map(str, children)))
+        else:
+            text = node.text.decode('utf-8')
+            line = 'L {}'.format(text)
+
+        idx = lookup.get(line)
+        if idx is not None:
+            return idx
+
+        hash_object = hashlib.sha256(line.encode('utf-8'))
+        hash_value = int.from_bytes(hash_object.digest()[:8], byteorder='big', signed=True)
+        idx = base64.urlsafe_b64encode(hash_value.to_bytes(8, byteorder='big', signed=True)).rstrip(b'=').decode('ascii')
+        lines.append('{} {}'.format(idx, line))
+        lookup[line] = idx
+
+        return idx
+
+    process_node(tree.root_node)
+    return '\n'.join(lines)        
+
+
+## Processes a tree and returns an AST 
+def process_tree(tree, code):
+    lines = []
+    def process_node(node):
+        if node.type == 'identifier':
+            lines.append(f'N {code[node.start_byte:node.end_byte].decode("utf-8")}')
+            lines.append(f'B identifier {len(lines) - 1}')
+            return len(lines) - 1
+        elif node.type == 'class':
+            return None
+        elif node.type == 'class_body':
+            children = []
+            for child in node.children:
+                if child.type not in ['{', '}']:
+                    child_index = process_node(child)
+                    if child_index is not None:
+                        children.append(child_index)
+            lines.append(f'B {node.type} {" ".join(map(str, children))}')
+            return len(lines) - 1
+        else:
+            children = []
+            for child in node.children:
+                child_index = process_node(child)
+                if child_index is not None:
+                    children.append(child_index)
+            lines.append(f'B {node.type} {" ".join(map(str, children))}')
+            return len(lines) - 1
+    process_node(tree.root_node)
+    return '\n'.join(lines)
+
+## Processes the tree relatively
+def process_tree_relatively(tree, code):
+    lines = []
+    def process_node(node):
+        if node.type == 'identifier':
+            lines.append(f'N {code[node.start_byte:node.end_byte].decode("utf-8")}')
+            lines.append(f'B identifier -1')
+            return len(lines) - 1
+        elif node.type == 'class':
+            return None
+        elif node.type == 'class_body':
+            children = []
+            for child in node.children:
+                if child.type not in ['{', '}']:
+                    child_index = process_node(child)
+                    if child_index is not None:
+                        children.append(child_index)
+            lines.append(f'B {node.type}')
+            return len(lines) - 1
+        else:
+            children = []
+            for child in node.children:
+                child_index = process_node(child)
+                if child_index is not None:
+                    children.append(child_index)
+            connections = [-len(lines) + i for i in children]
+            lines.append(f'B {node.type} {" ".join(map(str, connections))}')
+            return len(lines) - 1
+    process_node(tree.root_node)
+    return '\n'.join(lines)
+
 ## Parse the java file and return the tree
 def parse_java_file(parser, file_path):
     if not is_java_file(file_path):
@@ -86,8 +219,16 @@ def parse_java_file(parser, file_path):
     
     return tree_word 
 
-## Save the ast file
+
+## Save AST file
 def save_ast_file(file_path, tree):
+    with open(file_path, 'r') as f:
+        src = f.read()
+    with open(file_path+".ast", 'w') as f:
+        f.write(process_tree(tree, src))
+
+## Save tokenized file
+def save_tokenized_file(file_path, tree):
     with open(file_path+".ast", 'w') as f:
         for node in traverse(tree):
             if node.child_count == 0: