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Commit c1b81d42 authored by vand's avatar vand
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Update README.md

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To run this code:
* Download `foci-annotator` which contains two folders `mcode` and `data_folder`.
* Download `foci-annotator` which contains two folders: `mcode` and `data_folder`.
* Start matlab and navigate to `foci-annotator/mcode`.
* Open and run `annotation_example.m`. This will start the GUI on 5 images provided in `foci-annotator/data_folder`.
To annotate images:
* Left-right arrows are used to change between images.
* Up-down arrows are used to increase or decrease radius by one (starts with five).
* Clicking adds annotations (if in view limits and outside a previously added annotation).
* D (shift-d) allows deleting one annotation by clicking close (less than five times radius) to it.
* Up-down arrows are used to increase or decrease the radius by one (starts with five).
* Clicking adds annotations (if within the view limits and outside a previously added annotation).
* Pressing `D` (shift-d) allows deleting one annotation by clicking close (less than five times its radius) to it.
* Zooming and panning works as normal in Matlab, but must be exited to continue adding annotations.
* S saves annotations as a `.mat` file and a `.txt` file with csv formatted text. NOTE: previously saved files will be overwritten.
* Pressing `s` saves annotations as a `.mat` file and a `.txt` file with csv formatted text. NOTE: previously saved files will be overwritten.
Each row of the data contains one annotation given by: image number, transverse (x) coordinate, axial (z) coordinate, radius (in pixels).
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