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vand
foci-annotator
Commits
c1b81d42
Commit
c1b81d42
authored
Aug 21, 2020
by
vand
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To run this code:
*
Download
`foci-annotator`
which contains two folders
`mcode`
and
`data_folder`
.
*
Download
`foci-annotator`
which contains two folders
:
`mcode`
and
`data_folder`
.
*
Start matlab and navigate to
`foci-annotator/mcode`
.
*
Open and run
`annotation_example.m`
. This will start the GUI on 5 images provided in
`foci-annotator/data_folder`
.
To annotate images:
*
Left-right arrows are used to change between images.
*
Up-down arrows are used to increase or decrease radius by one (starts with five).
*
Clicking adds annotations (if
in
view limits and outside a previously added annotation).
*
D
(shift-d) allows deleting one annotation by clicking close (less than five times radius) to it.
*
Up-down arrows are used to increase or decrease
the
radius by one (starts with five).
*
Clicking adds annotations (if
within the
view limits and outside a previously added annotation).
*
Pressing
`D`
(shift-d) allows deleting one annotation by clicking close (less than five times
its
radius) to it.
*
Zooming and panning works as normal in Matlab, but must be exited to continue adding annotations.
*
S
saves annotations as a
`.mat`
file and a
`.txt`
file with csv formatted text. NOTE: previously saved files will be overwritten.
*
Pressing
`s`
saves annotations as a
`.mat`
file and a
`.txt`
file with csv formatted text. NOTE: previously saved files will be overwritten.
Each row of the data contains one annotation given by: image number, transverse (x) coordinate, axial (z) coordinate, radius (in pixels).
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