Updated documentation.org (improved clarity).

Documentation.org

@@ -483,11 +483,18 @@ filepath = plot_one_step_prediction_map(mp, xs, us, cluster=[0])
 
 #+end_src
 
-* TODO Markov Chain Monte Carlo
+* Markov Chain Monte Carlo
+
+The code blocks in this section associate with Figures 4, 5 and 6. The code can be found in the listed scripts, respectively:
+
+- =c0_stan.py= :: this code block is associated with subfigure (a) in Figure 4.
+- =c0_stan_ppc.py= :: this code block is associated with subfigure (a) in Figure 5.
+- =c1_stan.py= :: this code block is associated with subfigure (b) in Figure 4.
+- =c1_stan_ppc.py= :: this code block is associated with subfigure (b) in Figure 5.
+- =stan_cosimulate_ID_c0= :: this code block is associated with Figure 6.
 
-This code block is associated with subfigure (a) in Figure 4.
  #+NAME: c0_stan
- #+begin_src python :noweb strip-export :exports both :results file :tangle ./Scripts/c0_stan.py :return filepath
+ #+begin_src python :noweb strip-export :exports none :results file :tangle ./Scripts/c0_stan.py :return filepath
 cluster=0
 <<sindyc_header>>
 <<code_stan_fitModel>>
@@ -537,9 +544,8 @@ filepath = Plotter.plot_density(
 
  #+end_src
 
-This code block is associated with subfigure (a) in Figure 5.
 #+NAME: c0_stan_ppc
-#+begin_src python :exports both :results file :tangle ./Scripts/c0_stan_ppc.py :noweb yes :return filepath
+#+begin_src python :exports none :results file :tangle ./Scripts/c0_stan_ppc.py :noweb yes :return filepath
 import numpy as np
 <<paper_plotting_header>>
 import arviz as az
@@ -588,9 +594,8 @@ filepath = Plotter.plot_ppc(
 
 #+end_src
 
-This code block is associated with subfigure (b) in Figure 4.
 #+NAME: c1_stan
-#+begin_src python :noweb strip-export :exports both :results file :tangle ./Scripts/c1_stan.py :return filepath
+#+begin_src python :noweb strip-export :exports none :results file :tangle ./Scripts/c1_stan.py :return filepath
 cluster=1
 <<simo_IDCL_sindy_header>>
 <<code_stan_fitModel>>
@@ -637,8 +642,6 @@ filepath = Plotter.plot_density(stan_results,
 
 #+END_SRC
 
-This code block is associated with subfigure (b) in Figure 5.
-
 #+NAME: c1_stan_ppc
 #+begin_src python :exports code :results file :tangle ./Scripts/c1_stan_ppc.py :noweb yes :return filepath
 import numpy as np
@@ -688,10 +691,8 @@ filepath = Plotter.plot_ppc(
 
 #+end_src
 
-This code block is associated with Figure 6.
-
 #+NAME: stan_cosimulate_ID_c0
-#+begin_src python :results file :exports both :return filename :tangle ./Scripts/stan_cosimulate_ID_c0.py :noweb yes
+#+begin_src python :results file :exports none :return filename :tangle ./Scripts/stan_cosimulate_ID_c0.py :noweb yes
 from collections import OrderedDict
 import numpy as np
 
@@ -743,7 +744,16 @@ filename = Plotter.plot_sectors(
 
 #+end_src
 
-* WAIT Stan submodels
+* Stan submodels
+
+The code blocks in this section represent the Stan models with increasing complexity. The code can be found in the listed scripts, respectively:
+
+- =sindyc_stan_code_12.stan= :: Stan model with active terms 1 and 2.
+- =sindyc_stan_code_23.stan= :: Stan model with active terms 2 and 3.
+- =sindyc_stan_code_34.stan= :: Stan model with active terms 3 and 4.
+- =sindyc_stan_code_345.stan= :: Stan model with active terms 3, 4 and 5.
+- =sindyc_stan_code_124.stan= :: Stan model with active terms 1, 2 and 4.
+- =sindyc_stan_code_1234.stan= :: Stan model with active terms 1, 2, 3 and 4.
 
 #+NAME: sindyc_stan_code_12
 #+begin_src stan :exports code :results none :tangle ./Scripts/sindyc_stan_code_12.stan
@@ -1383,7 +1393,7 @@ def read_from_disc(filename="save.pkl"):
 Common prosumer response dynamics.
 
  #+NAME: paper_prosumerDynamics
- #+begin_src python :results none :exports code
+ #+begin_src python :results none :exports none
 class Prosumer:
     """Common prosumer response model.
     """